Stem-loop ssc-mir-378-1

Accession

MI0013088

Description

Sus scrofa ssc-mir-378-1 precursor miRNA

Literature search

20 open access papers mention ssc-mir-378-1
(99 sentences)

Sequence

20036331 reads, 12644.0 reads per million, 214 experiments

ccacccagggCUCCUGACUCCAGGUCCUGUGUguugccuggaaauagcACUGGACUUGGAGUCAGAAGGCcugcguggag
((((.((((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))).))))..

Structure

--    c    g  C              U    gu gcc 
  ccac cagg CU CUGACUCCAGGUCC GUGU  u   u
  |||| |||| || |||||||||||||| ||||  |    
  ggug gucC GA GACUGAGGUUCAGG CAcg  a   g
ga    c    G  A              U    au aag 

Annotation confidence High

Genome context

chr2: 157640353-157640432 [+]

Mature ssc-miR-378-1-5p

• Accession: MIMAT0052610
• Description: Sus scrofa ssc-miR-378-1-5p mature miRNA
• Sequence: 11 - CUCCUGACUCCAGGUCCUGUGU - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature ssc-miR-378-3p

• Accession: MIMAT0013868
• Description: Sus scrofa ssc-miR-378-3p mature miRNA
• Sequence: 49 - ACUGGACUUGGAGUCAGAAGGC - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100