Stem-loop ssc-mir-30d

Accession

MI0013091

Description

Sus scrofa ssc-mir-30d precursor miRNA

Literature search

32 open access papers mention ssc-mir-30d
(54 sentences)

Sequence

15901277 reads, 14034.0 reads per million, 214 experiments

cuguuguUGUAAACAUCCCCGACUGGAAGCUguaagacauagcuaagCUUUCAGUCAGAUGUUUGCUGCcaccgacucu
..((.((.(((((((((...(((((((((((..............))))))))))).))))))))).)).)).......

Structure

-----cu  u  U         CCC           guaaga 
       gu gu GUAAACAUC   GACUGGAAGCU      c
       || || |||||||||   |||||||||||       
       ca CG CGUUUGUAG   CUGACUUUCga      a
ucucagc  c  U         --A           aucgau 

Annotation confidence High

Genome context

chr4: 6713518-6713596 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-30d

Mature ssc-miR-30d-5p

• Accession: MIMAT0013871
• Description: Sus scrofa ssc-miR-30d-5p mature miRNA
• Sequence: 8 - UGUAAACAUCCCCGACUGGAAGCU - 31
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-30d-3p

• Accession: MIMAT0052612
• Description: Sus scrofa ssc-miR-30d-3p mature miRNA
• Sequence: 48 - CUUUCAGUCAGAUGUUUGCUGC - 69
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100