Stem-loop ssc-mir-486-1

Accession

MI0013103

Description

Sus scrofa ssc-mir-486-1 precursor miRNA

Literature search

12 open access papers mention ssc-mir-486-1
(25 sentences)

Sequence

566 reads, 264 reads per million, 12 experiments

gcuggggcuucagggccagcucggaccucugaccucccugacgggUCCUGUACUGAGCUGCCCCGAGgcccucacugugc
...((((((((.((((.(((((((((....(((((.......)))))..)).))))))))))).))))))))........

Structure

-----gcu        a    c       -  cucu     cc 
        ggggcuuc gggc agcucgg ac    gaccu  c
        |||||||| |||| ||||||| ||    |||||  u
        ucccgGAG CCCG UCGAGUC UG    CUggg  g
cgugucac        C    -       A  --UC     ca 

Annotation confidence Not enough data

Genome context

chr17: 12191266-12191345 [-]

Mature ssc-miR-486

• Accession: MIMAT0013886
• Description: Sus scrofa ssc-miR-486 mature miRNA
• Sequence: 46 - UCCUGUACUGAGCUGCCCCGAG - 67
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100