Stem-loop ssc-mir-181b-1

Accession

MI0013107

Description

Sus scrofa ssc-mir-181b-1 precursor miRNA

Literature search

26 open access papers mention ssc-mir-181b-1
(46 sentences)

Sequence

2696539 reads, 2111.0 reads per million, 212 experiments

ggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguagacaagCUCACUGAACAAUGAAUGCAAcuguggccc
(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....))))))).

Structure

-       aucAA         CUG          gaac   g 
 ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
 |||||||     |||||||||   ||||||||||    |||  
 ccggugu     GUAAGUAAC   AGUCACUCga    aca a
c       -cAAC         --A          ----   g 

Annotation confidence High

Genome context

chr10: 26426857-26426936 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-181b-1

Mature ssc-miR-181b-5p

• Accession: MIMAT0002126
• Description: Sus scrofa ssc-miR-181b-5p mature miRNA
• Sequence: 11 - AACAUUCAUUGCUGUCGGUGGGUU - 34
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-181b-1-3p

• Accession: MIMAT0052552
• Description: Sus scrofa ssc-miR-181b-1-3p mature miRNA
• Sequence: 51 - CUCACUGAACAAUGAAUGCAA - 71
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100