Accession
MI0013115
Description
Sus scrofa
ssc-mir-125a precursor miRNA
Literature search
38 open access papers mention ssc-mir-125a
(71 sentences)
(71 sentences)
Sequence
7143013
reads,
5774.0
reads per million, 214 experiments
ggccucugagUCCCUGAGACCCUUUAACCUGUGaggacauccagggucACAGGUGAGGUUCUUGGGAGCcuggcguccgg
.(((...(..((((.((((.((((..((((((((((....))....)))))))))))).))))))))..).)))......
.(((...(..((((.((((.((((..((((((((((....))....)))))))))))).))))))))..).)))......
Structure
-----g ucu ag U C UA ---- a
gcc g UCCC GAGA CCUU ACCUGUGa gg c
||| | |||| |||| |||| |||||||| ||
cgg c AGGG UUCU GGAG UGGACAcu cc a
ggccug --u CG - U -- ggga u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr6: 51858852-51858931 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-125a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-125a-5p
| Accession | MIMAT0013897 |
| Description | Sus scrofa ssc-miR-125a-5p mature miRNA |
| Sequence | 11 - UCCCUGAGACCCUUUAACCUGUG - 33 |
| Evidence |
experimental
Illumina [1,3-4], cloned [2] |
Mature ssc-miR-125a-3p
| Accession | MIMAT0052621 |
| Description | Sus scrofa ssc-miR-125a-3p mature miRNA |
| Sequence | 49 - ACAGGUGAGGUUCUUGGGAGC - 69 |
| Evidence |
experimental
Illumina [1,3-4], cloned [2] |
References
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