miRBase entry: ssc-mir-100

Stem-loop ssc-mir-100

Sus scrofa ssc-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
5 open access papers mention ssc-mir-100
(10 sentences)


2533 reads, 992 reads per million, 13 experiments

aggccuguugcc   A   C      C   A      c  au 
            aca ACC GUAGAU CGA CUUGUG ug  a
            ||| ||| |||||| ||| |||||| ||   
            ugu ugg uaucug guu gaacac ac  g
-----gugucug   a   a      u   c      -  gu 

Annotation confidence Not enough data
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Genome context
chr9: 54383382-54383461 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-100
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ssc-miR-100

Accession MIMAT0013911
Description Sus scrofa ssc-miR-100 mature miRNA
Evidence experimental
Illumina [1,3-4], cloned [2]


  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100