Stem-loop ssc-mir-504

Accession

MI0013143

Description

Sus scrofa ssc-mir-504 precursor miRNA

Literature search

4 open access papers mention ssc-mir-504
(5 sentences)

Sequence

112333 reads, 134.0 reads per million, 199 experiments

gcuguugggAGACCCUGGUCUGCACUCUAUCUguaugcuuacugaAGGGAGCGCAGGGCAGGGUUUcccacacagagggc
.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).)))).....

Structure

----g    -            G     A    -A  U   u 
     cugu ugggAGACCCUG UCUGC CUCU  UC gua g
     |||| |||||||||||| ||||| ||||  || |||  
     gaca acccUUUGGGAC GGACG GAGG  ag cau c
cggga    c            G     C    GA  u   u 

Annotation confidence High

Genome context

chrX: 129654206-129654285 [+]

Mature ssc-miR-504-5p

• Accession: MIMAT0013931
• Description: Sus scrofa ssc-miR-504-5p mature miRNA
• Sequence: 10 - AGACCCUGGUCUGCACUCUAUCU - 32
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-504-3p

• Accession: MIMAT0052632
• Description: Sus scrofa ssc-miR-504-3p mature miRNA
• Sequence: 46 - AGGGAGCGCAGGGCAGGGUUU - 66
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100