Stem-loop ssc-mir-532

Accession

MI0013150

Description

Sus scrofa ssc-mir-532 precursor miRNA

Literature search

6 open access papers mention ssc-mir-532
(10 sentences)

Sequence

187 reads, 104 reads per million, 12 experiments

uugcuuucucucuuaCAUGCCUUGAGUGUAGGACCGUuggcaucugaauacCCUCCCACACCCAAGGCUUGCAggagggc
.......(((((((.((.((((((.((((.(((..((...(....)...))..))).)))).)))))).)).))))))).

Structure

uugcuuu       a  U      A    A   CC  ugg a 
       cucucuu CA GCCUUG GUGU GGA  GU   c u
       ||||||| || |||||| |||| |||  ||   |  
       gggaggA GU CGGAAC CACA CCU  ca   g c
------c       C  U      C    C   CC  uaa u 

Annotation confidence Not enough data

Genome context

chrX: 48632025-48632104 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-532

Mature ssc-miR-532-5p

• Accession: MIMAT0013940
• Description: Sus scrofa ssc-miR-532-5p mature miRNA
• Sequence: 16 - CAUGCCUUGAGUGUAGGACCGU - 37
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-532-3p

• Accession: MIMAT0013941
• Description: Sus scrofa ssc-miR-532-3p mature miRNA
• Sequence: 52 - CCUCCCACACCCAAGGCUUGCA - 73
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100