Stem-loop ssc-mir-505

Accession

MI0013171

Description

Sus scrofa ssc-mir-505 precursor miRNA

Literature search

6 open access papers mention ssc-mir-505
(9 sentences)

Sequence

210973 reads, 144.0 reads per million, 211 experiments

gcacucaguggGGGAGCCAGGAAGUAUUGAUGUUUCugccagguuagcgUCAACACUUGCUGGUUUCCUCUcuggagcau
((.(.(((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).)))).))..

Structure

--  a u   u           G    A        -U  g 
  gc c cag ggGGGAGCCAG AAGU UUGAUGUU  Cu c
  || | ||| ||||||||||| |||| ||||||||  ||  
  cg g guc CUCCUUUGGUC UUCA AACUgcga  gg c
ua  a -   U           G    C        uu  a 

Annotation confidence Medium

Genome context

chrX: 130835642-130835721 [-]

Mature ssc-miR-505-5p

• Accession: MIMAT0052646
• Description: Sus scrofa ssc-miR-505-5p mature miRNA
• Sequence: 12 - GGGAGCCAGGAAGUAUUGAUGUUUC - 36
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-505-3p

• Accession: MIMAT0013961
• Description: Sus scrofa ssc-miR-505-3p mature miRNA
• Sequence: 50 - UCAACACUUGCUGGUUUCCUCU - 71
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100