miRBase entry: bhv1-mir-B6

Stem-loop bhv1-mir-B6


Accession
MI0013178
Description
Bovine herpesvirus 1 bhv1-mir-B6 precursor miRNA


Sequence

cgcggagggcAAGUGCCCGACGCGGGGAACGUGgcggcggacgccagcgccgCGUCUCCGGCGCCGGGUCCUGGCccuccgcg
((((((((((.((.(((((.(((.(((.((((((((..((...))..)))))))).))).))).))))).)).))))))))))

Structure
          A  U     A   G   A        gc  a 
cgcggagggc AG GCCCG CGC GGG ACGUGgcg  gg  
|||||||||| || ||||| ||| ||| ||||||||  || c
gcgccuccCG UC UGGGC GCG CCU UGCgccgc  cc  
          G  C     C   G   C        ga  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bhv1-miR-B6-5p

Accession MIMAT0013967
Description Bovine herpesvirus 1 bhv1-miR-B6-5p mature miRNA
Sequence 11 - AAGUGCCCGACGCGGGGAACGUG - 33
Evidence experimental
Illumina [1]

Mature bhv1-miR-B6-3p

Accession MIMAT0013968
Description Bovine herpesvirus 1 bhv1-miR-B6-3p mature miRNA
Sequence 53 - CGUCUCCGGCGCCGGGUCCUGGC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19793906
    Characterization of microRNAs encoded by the bovine herpesvirus 1 genome
    "Glazov EA, Horwood PF, Assavalapsakul W, Kongsuwan K, Mitchell RW, Mitter N, Mahony TJ"
    "J Gen Virol (2010) 91:32-41