Stem-loop sbi-MIR399k

Accession

MI0013258

Description

Sorghum bicolor sbi-MIR399k precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

3 open access papers mention sbi-MIR399k
(5 sentences)

Sequence

agggcaacccuccauuggcaggugcgaccuacacccuacccUGCCAAAGGGGAUUUGCCCGGc
.((((((..((((.((((((((((.(........).)).)))))))).))))..))))))...

Structure

--a      cc    a        -  c acc 
   gggcaa  cucc uuggcagg ug g   u
   ||||||  |||| |||||||| || |    
   CCCGUU  GGGG AACCGUcc au c   a
cGG      UA    A        c  c cac 

Annotation confidence Not enough data

Genome context

chr4: 9790202-9790264 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR399k

Mature sbi-miR399k

• Accession: MIMAT0014047
• Description: Sorghum bicolor sbi-miR399k mature miRNA
• Sequence: 42 - UGCCAAAGGGGAUUUGCCCGG - 62
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716