miRBase entry: osa-MIR2918

Stem-loop osa-MIR2918


Accession
MI0013260
Description
Oryza sativa osa-MIR2918 precursor miRNA


Sequence

254 reads, 4.0 reads per million, 82 experiments
guaagcuucAUGGGCAAAGAAGGAUGGAUuauuggcaagccugcaauuuuguugcacacuucugaugcuggagacagcugggaaagaauacccuugagugcccagcuuccugggaacaugguaaguuugcauauacAUCCGUGUUGUCUGCGCUUUAacaaggau
.....(((...((((..(((((.(((((((((..((((((.((((((...))))))...((((.(.((((....))))).))))....((((..((....(((((....)))))..)).)))).))))))..))).)))))).)).)))..))))....)))...

Structure
guaag   -cAU    AA   -  G      -   ug      cugcaauuuuguugcacacuucugaugcuggagacagcugggaaagaa    cu  agug     c 
     cuu    GGGC  AGA AG AUGGAU uau  gcaagc                                                uacc  ug    cccag u
     |||    ||||  ||| || |||||| |||  ||||||                                                ||||  ||    |||||  
     gaa    UUCG  UCU UU UGCCUA aua  cguuug                                                augg  ac    ggguc u
--uag   caAU    CG   G  G      c   ua      -----------------------------------------------a    -u  --aa     c 


Annotation confidence Not enough data
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Genome context
6: 31091921-31092085 [-]

Database links

Mature osa-miR2918-5p

Accession MIMAT0056154
Description Oryza sativa osa-miR2918-5p mature miRNA
Sequence 10 - AUGGGCAAAGAAGGAUGGAU - 29
Evidence experimental
unknown

Mature osa-miR2918-3p

Accession MIMAT0014049
Description Oryza sativa osa-miR2918-3p mature miRNA
Sequence 137 - AUCCGUGUUGUCUGCGCUUUA - 157
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20131478
    Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
    "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
    "Mol Genet Genomics (2009) 282:463-474