miRBase entry: osa-MIR2921

Stem-loop osa-MIR2921


Accession
MI0013263
Description
Oryza sativa osa-MIR2921 precursor miRNA


Sequence

22398 reads, 121.0 reads per million, 141 experiments
auAAGAACUUAAUAUAACUUUAAAGCaauaagaucuuaauauaaagggcagauuuagcauaacaauuaagcauaugauauuagaauagcuaaaucagguaagaucggcugaaacuccgauacuaucucuauaaaugaucauaaaacaagcuagauaucacaauuauagauagaACUUAAUAGAUCGAACUCAACCGAugcaacauuaagcauauaaaauaacuguaagaucuaaacaaga
..............................((((((((............((((((((.............................)))))))).((((..(((((........)))))..))))(((((((.((((..((........))...))))...))))))).....((((((..((((........)))).....))))))...............))))))))........

Structure
auAAGAACUUAAUAUAACUUUAAAGCaaua        auauaaagggcagauuuagcauaacaauuaagcauaugauauuagaauagcuaaaucagguaagaucggcugaaacuccgauacuaucucuauaaaugaucauaaaacaagcuagauaucacaauuauagauagaA      ---AG    AAC 
                              agaucuua                                                                                                                                        CUUAAU     AUCG   U
                              ||||||||                                                                                                                                        ||||||     ||||    
                              ucuagaau                                                                                                                                        gaauua     uAGC   C
----------------------agaacaaa        -------------------------------------------------------------------------------------------------------------------------gucaauaaaauauac      caacg    CAA 


Annotation confidence Low
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Genome context
11: 22213555-22213794 [+]

Database links

Mature osa-miR2921-5p

Accession MIMAT0014052
Description Oryza sativa osa-miR2921-5p mature miRNA
Sequence 3 - AAGAACUUAAUAUAACUUUAAAGC - 26
Evidence experimental
cloned [1]

Mature osa-miR2921-3p

Accession MIMAT0056156
Description Oryza sativa osa-miR2921-3p mature miRNA
Sequence 174 - ACUUAAUAGAUCGAACUCAACCGA - 197
Evidence experimental
unknown

References

  1. PubMed ID: 20131478
    Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
    "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
    "Mol Genet Genomics (2009) 282:463-474