Stem-loop rlcv-mir-rL1-14-2

Accession

MI0013275

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-14-2 precursor miRNA

Sequence

caccugcccuccggcugggUCGGACGGUCUGGUGCGCUUGAUguguuuuuaguaccaUCGCACAUCAGGCUGAACGACUcagaggaguggcccuug
.....(((((((..((((((((..((((((((((.((..((((.((.......)))))))).))))))))))..)))))))).)))).))).....

Structure

caccu   -    gg        GA          C  UU    u  uu 
     gcc cucc  cugggUCG  CGGUCUGGUG GC  GAUg gu  u
     ||| ||||  ||||||||  |||||||||| ||  |||| ||  u
     cgg gagg  gacUCAGC  GUCGGACUAC CG  CUac ca  a
guucc   u    -a        AA          A  --    -  ug 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-14-5p

• Accession: MIMAT0003444
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-14-5p mature miRNA
• Sequence: 20 - UCGGACGGUCUGGUGCGCUUGAU - 42
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-14-3p

• Accession: MIMAT0003445
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-14-3p mature miRNA
• Sequence: 58 - UCGCACAUCAGGCUGAACGACU - 79
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635