Stem-loop rlcv-mir-rL1-17

Accession

MI0013276

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-17 precursor miRNA

Sequence

caugcccgugguguucUGAUGGACAGCGGGGAAGUGCACUugugcuuauguaaucggUGCUUCGCCCUCUCCAUCAUaauaacacgaggaug
(((.((((((..(((.(((((((.((.((.(((((((.....(((....)))....))))))).)))).))))))).)))..)))).)))))

Structure

   g  -    gu   c       C  C  G       ACUug   u 
cau cc cgug  guu UGAUGGA AG GG GAAGUGC     ugc u
||| || ||||  ||| ||||||| || || |||||||     |||  
gua gg gcac  uaa ACUACCU UC CC CUUCGUg     aug a
   -  a    aa   U       C  -  G       -gcua   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-17-3p

• Accession: MIMAT0014064
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-17-3p mature miRNA
• Sequence: 58 - UGCUUCGCCCUCUCCAUCAU - 77
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-17-5p

• Accession: MIMAT0019185
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-17-5p mature miRNA
• Sequence: 17 - UGAUGGACAGCGGGGAAGUGCACU - 40
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635