Stem-loop rlcv-mir-rL1-20

Accession

MI0013279

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-20 precursor miRNA

Sequence

gcauugaccuuguugguuaccuUAAAGGGUAGUGUGGUUCACAGCaguuugugaaaaaccUGUGGAUCUAACUUCCCUUAGUguaacccaggguggagc
((.((.((((((..((((((((..(((((.(((..(((((((((..((((.....)))))))))))))..))).))))))).)))))))))))).))))

Structure

  a  g      uu      -  UA     U   GU         Ca    g 
gc uu accuug  gguuac cu  AAGGG AGU  GGUUCACAG  guuu u
|| || ||||||  |||||| ||  ||||| |||  |||||||||  |||| g
cg ag ugggac  ccaaug GA  UUCCC UCA  CUAGGUGUc  caaa a
  -  g      --      U  --     U   AU         --    a 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-20-5p

• Accession: MIMAT0014065
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-20-5p mature miRNA
• Sequence: 23 - UAAAGGGUAGUGUGGUUCACAGC - 45
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-20-3p

• Accession: MIMAT0014066
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-20-3p mature miRNA
• Sequence: 61 - UGUGGAUCUAACUUCCCUUAGU - 82
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635