Stem-loop rlcv-mir-rL1-22

Accession

MI0013281

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-22 precursor miRNA

Sequence

auaguuaucuaggcuugauauUCGUGGGGGGAAACGGUGGAUuuugguguaguuauuauUCACCGUUUCAUCCCCACGAUUauucgguuucaauugcucu
..(((.((..(((((.((((.(((((((((((((((((((((..(((.....)))..)))))))))))).))))))))).)))).)))))..)).)))..

Structure

au   u  cu     u    u         -            uu   u 
  agu au  aggcu gaua UCGUGGGGG GAAACGGUGGAU  ugg g
  ||| ||  ||||| |||| ||||||||| ||||||||||||  ||| u
  ucg ua  uuugg uuaU AGCACCCCU CUUUGCCACUua  auu a
uc   u  ac     c    U         A            uu   g 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-22-3p

• Accession: MIMAT0016944
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-22-3p mature miRNA
• Sequence: 60 - UCACCGUUUCAUCCCCACGAUU - 81
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-22-5p

• Accession: MIMAT0019189
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-22-5p mature miRNA
• Sequence: 22 - UCGUGGGGGGAAACGGUGGAU - 42
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635