Stem-loop rlcv-mir-rL1-23

Accession

MI0013282

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-23 precursor miRNA

Sequence

uggcugugggggcuggguauUCACUAGUGCUGGCACCUAAGAuaacuagaauugUUAGUUGUCUGCACUGGAGAGUauucgguuucagaaguca
(((((...((((((((((((((.(((((((.((((.((((.(..........).)))).)))).))))))).))))))))))))))...)))))

Structure

     gug              A       U    C    G uaac 
uggcu   ggggcuggguauUC CUAGUGC GGCA CUAA A    u
|||||   |||||||||||||| ||||||| |||| |||| |     
acuga   cuuuggcuuaUGAG GGUCACG CUGU GAUU u    a
     aga              A       U    U    g uaag 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-23-5p

• Accession: MIMAT0016945
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-23-5p mature miRNA
• Sequence: 21 - UCACUAGUGCUGGCACCUAAGA - 42
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-23-3p

• Accession: MIMAT0016946
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-23-3p mature miRNA
• Sequence: 55 - UUAGUUGUCUGCACUGGAGAGU - 76
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635