Stem-loop rlcv-mir-rL1-26

Accession

MI0013285

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-26 precursor miRNA

Sequence

cgcuggcGCUACACCCGGGAUUCGAAGCagucauugggccucugcUACGAUUCUCCGGGUUUAGCaguugcg
(((.(((((((.((((((((.(((.(((((...........))))).))).)).)))))).)))).))))))

Structure

   u   -    C      -  U   A     ucau 
cgc ggc GCUA ACCCGG GA UCG AGCag    u
||| ||| |||| |||||| || ||| |||||    g
gcg uug CGAU UGGGCC CU AGC Ucguc    g
   -   a    U      U  U   A     uccg 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-26-3p

• Accession: MIMAT0016950
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-26-3p mature miRNA
• Sequence: 46 - UACGAUUCUCCGGGUUUAGC - 65
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-26-5p

• Accession: MIMAT0019191
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-26-5p mature miRNA
• Sequence: 8 - GCUACACCCGGGAUUCGAAGC - 28
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635