Stem-loop rlcv-mir-rL1-27

Accession

MI0013286

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-27 precursor miRNA

Sequence

ggagugacccggaGCCGCCUCCUUGGUUCUGUCcacauuuuguugcugCACAUAACCAUGGAGGUGGUUGcggugcagcc
((..((..(((.((((((((((.(((((.(((.((((......)).)).))).))))).)))))))))).)))..)).))

Structure

  ag  ac   g          U     C   C  -  uu 
gg  ug  ccg aGCCGCCUCC UGGUU UGU ca ca  u
||  ||  ||| |||||||||| ||||| ||| || ||   
cc  ac  ggc UUGGUGGAGG ACCAA ACA gu gu  u
  -g  gu   G          U     U   C  c  ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-27-3p

• Accession: MIMAT0016951
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-27-3p mature miRNA
• Sequence: 49 - CACAUAACCAUGGAGGUGGUUG - 70
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-27-5p

• Accession: MIMAT0019192
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-27-5p mature miRNA
• Sequence: 14 - GCCGCCUCCUUGGUUCUGUC - 33
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635