Stem-loop rlcv-mir-rL1-28

Accession

MI0013287

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-28 precursor miRNA

Sequence

guggacccggagagucugucuUGGAAGGCGUUGCUUUCAGCUGuuuauaugguugGAGGAAAGUAUCGCCUUCUAGaauuggcuuguccau
((((((.....(((((.((.((((((((((.(((((((((((((....)))))))))....)))).)))))))))).)).)))))))))))

Structure

      ccgga     u  c          U    ----         u 
guggac     gaguc gu uUGGAAGGCG UGCU    UUCAGCUGu u
||||||     ||||| || |||||||||| ||||    |||||||||  
uaccug     uucgg ua GAUCUUCCGC AUGA    AGguuggua a
      -----     u  a          U    AAGG         u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-28-3p

• Accession: MIMAT0016952
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-28-3p mature miRNA
• Sequence: 56 - GAGGAAAGUAUCGCCUUCUAG - 76
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-28-5p

• Accession: MIMAT0019193
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-28-5p mature miRNA
• Sequence: 22 - UGGAAGGCGUUGCUUUCAGCUG - 43
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635