Stem-loop rlcv-mir-rL1-29

Accession

MI0013288

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-29 precursor miRNA

Sequence

gcugaguccguguccuaaaaCCAGUCCCAGCAGACAAAACauaguauggucgagugUUUUGUUUGCUUGGGACUGCAGuuagggcgcguaaacucgu
..(((((.((((((((((...(((((((((((((((((((((.(......)..))))))))))))).))))))))...))))))))))...))))).

Structure

gc     --c          aaC        -             -a ua 
  ugagu   cguguccuaa   CAGUCCCA GCAGACAAAACau  g  u
  |||||   ||||||||||   |||||||| |||||||||||||  |   
  gcuca   gcgcgggauu   GUCAGGGU CGUUUGUUUUgug  c  g
-u     aau          GAC        U             ag ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-29-3p

• Accession: MIMAT0016953
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-29-3p mature miRNA
• Sequence: 57 - UUUUGUUUGCUUGGGACUGCAG - 78
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-29-5p

• Accession: MIMAT0019194
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-29-5p mature miRNA
• Sequence: 21 - CCAGUCCCAGCAGACAAAAC - 40
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635