Stem-loop rlcv-mir-rL1-30

Accession

MI0013289

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-30 precursor miRNA

Sequence

caggaagcccguguccuggcACCGGUCCUUUGAGGUACGAAACauugugaguuugUUUCGUUUUCGAAGGUCGGCUGUcagugcauguggagauuuucg
..((((((((((((.((((((((((.(((((((((.((((((((.........))))))))))))))))))))).)))))).))))).))...))))).

Structure

ca     ---  -     c      -    U         U        uug 
  ggaag   cc cgugu cuggcA CCGG CCUUUGAGG ACGAAACa   u
  |||||   || ||||| |||||| |||| ||||||||| ||||||||   g
  cuuuu   gg guacg gacUGU GGCU GGAAGCUUU UGCUUUgu   a
-g     aga  u     u      C    -         -        uug 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-30-3p

• Accession: MIMAT0016954
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-30-3p mature miRNA
• Sequence: 56 - UUUCGUUUUCGAAGGUCGGCUGU - 78
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-30-5p

• Accession: MIMAT0019195
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-30-5p mature miRNA
• Sequence: 21 - ACCGGUCCUUUGAGGUACGAAAC - 43
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635