miRBase entry: ctr-MIR166

Stem-loop ctr-MIR166


Accession
MI0013297
Description
Citrus trifoliata ctr-MIR166 precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ctr-MIR166
(3 sentences)

Sequence

gguuugucugaaggaucuaggguuaauugggaagcuuuuucuuuugaggggaauguugucuggcucgaggccacuaacuagaucuuugauuuaaucucaguugaucauauauuuguuucauuuuucuuccauaaaauuuaauuauauugagauacccaucauugaucuuaagauaauuaaguuagugacgUCGGACCAGGCUUCAUUCCCCCcaauaauugcuucuaucugcuaugauaucaucuucauuucuuggaggugcugugaucaguucucaaacuuuaguugauuuuuucacaauuuuucuuuuuguuuaauuuauugaucuuguguuguguauauuuguauggucaacggagagaucuuggucauuggccaugagcagauugguguaaugaugaaagauuuugacug
.....((((.((((((((((........((.((..(((((((....)))))))..)).))(((((...)))))....)))))))))).).....((((.((((((((((((..(((..(((........(((..(((((((((((.(((((((...((....))))))))).))))))))))).)))..(.((((..((((...................))))...)))))....(((.((((((((.....)))))))).)))(((((((....((((...((..((............))..))....)))).....))))))).......))).)))..)))))))))))).))))((((((.(((((((((((.........)))).)))))))..))))))..)))..

Structure
gguuu   ugaaggaucuaggguuaauugggaagcuuuuucuuuugaggggaauguugucuggcucgaggccacuaacuagaucuuugauuuaa    a            uu   uu   ----------------------------------uuuucuuccauaaaauuuaauuauauugagauacccaucauugaucuuaagauaauuaaguuagugac U    -CC    UUCAUUCC 
     guc                                                                                      ucuc guugaucauaua  ugu  cau                                                                                                      g CGGA   AGGC        C
     |||                                                                                      |||| ||||||||||||  |||  |||                                                                                                      | ||||   ||||        C
     cag                                                                                      agag caacugguaugu  aua  gug                                                                                                      c gucu   uucg        C
---gu   -------------------------------------uuuuagaaaguaguaaugugguuagacgaguaccgguuacugguucuag    g            uu   -u   uuguguucuaguuauuuaauuuguuuuucuuuuuaacacuuuuuuaguugauuucaaacucuugacuagugucguggagguucuuuacuucuacuauaguau -    auc    uuaauaac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ctr-miR166

Accession MIMAT0014071
Description Citrus trifoliata ctr-miR166 mature miRNA
Sequence 191 - UCGGACCAGGCUUCAUUCCCCC - 212
Evidence experimental
Northern [1]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685