Stem-loop ccl-MIR168

Accession

MI0013299

Description

Citrus clementina ccl-MIR168 precursor miRNA

Sequence

guuaccggcggucucuaauUCGCUUGGUGCAGGUCGGGAAcugauuggcuaguuuuuuuuugaaauuuuuugacagcgagguggcguguuguaauuggucgucacguuuaaauuaaugauugaaaaaaaugcgaauuggaucccgccuugcaucaacugaaucggagaccgaggug
..((((..((((((((.(((((.((((((((((.(((((.((((((.((..(((((((((...((((..((((....((.((((((.............)))))).))....)))).))))))))))))))).)))))).))))).)))))))))).))))).)))))))).))))

Structure

gu    gg        a     C          U     A      g  ua         uga    uu    cagc  g      uguug 
  uacc  cggucucu auUCG UUGGUGCAGG CGGGA cugauu gc  guuuuuuuu   aauu  uuga    ga guggcg     u
  ||||  |||||||| ||||| |||||||||| ||||| |||||| ||  |||||||||   ||||  ||||    || ||||||     a
  gugg  gccagagg uaagu aacuacguuc gcccu gguuaa cg  uaaaaaaag   uuag  aauu    uu cacugc     a
--    -a        c     c          c     a      g  --         ---    -u    aaau  g      ugguu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ccl-miR168

• Accession: MIMAT0014073
• Description: Citrus clementina ccl-miR168 mature miRNA
• Sequence: 20 - UCGCUUGGUGCAGGUCGGGAA - 40
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685