Stem-loop ccl-MIR171

Accession

MI0013301

Description

Citrus clementina ccl-MIR171 precursor miRNA

Sequence

gaucucuuggggguuaaaaugaagauuguggugaccauuuuggaggauggauggguacucacgggauauuggugcgguucaauaagaaaacggugcucaauacuuuuugagcuccgcuuuuUGAUUGAGCCGCGCCAAUAUCacgugccacucgcucucuaauugcuuucuuuuaagcacaggggagcgcguaauuauguugaggucagguaaguagggguuuaaauuaaaauucuagcuuauugcuucuguuuaaauuuuacuguucaauuggcuccauuuagaugcaucauuguuuuuauguuaugacccuuucgaauu
....((..((((((((..((((((((.((((((..((((((((((..(((((..((((.((........)))))).)))))....((((.(((.((((((......)))))).))).)))).((((((((.((((.........)))).((.((((((((...(((((......)))))..)))))))).)).........(((((..(((((((.(((((((......))))))).))))))))))))...............))))))))..)))))...))))))))))).))))))))....))))))))..))...

Structure

gauc  uu        --aa        u      ac     ---     gauggauggguacucacgggauauuggugcgguucaauaagaaaacggugcucaauacuuuuugagcuccgcuuuuU        -------------------------------------------------------------------------------------------------------------------C    CAA 
    uc  ggggguua    augaagau guggug  cauuu   uggag                                                                             GAUUGAGC                                                                                                                    GCGC   U
    ||  ||||||||    |||||||| ||||||  |||||   |||||                                                                             ||||||||                                                                                                                    ||||   A
    ag  uucccagu    uauuuuug uacuac  guaga   accuc                                                                             uuaacuug                                                                                                                    cgug   U
-uua  cu        auug        u      --     uuu     ---------------------------------------------------------------------------gg        ucauuuuaaauuugucuucguuauucgaucuuaaaauuaaauuuggggaugaauggacuggaguuguauuaaugcgcgaggggacacgaauuuucuuucguuaaucucucgcucac    caC 

Annotation confidence Not enough data

Genome context

Unknown

Mature ccl-miR171

• Accession: MIMAT0014075
• Description: Citrus clementina ccl-miR171 mature miRNA
• Sequence: 122 - UGAUUGAGCCGCGCCAAUAUC - 142
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685