Stem-loop ccl-MIR396

Accession

MI0013304

Description

Citrus clementina ccl-MIR396 precursor miRNA

Sequence

agagugguccuugaaauagccucuuuguaugggcuuccugcuuaauucuuccucucuaacaucgaguguaaaaugaauggaagaucaucaagccacagauaugagaucugaacauuauuauuauuaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUccacuguuugcugauuaauacacggcucuugcuagcuaggcgccguauguagacaccgcgcgccaugggagcucaagaaagcugugggagaacauggcacaccuucaggauuug
.....((((((.(((..(((((........)))))...((((...(((((((.(((.......))).(((((..(..((((((.(((..((((..(((((.....))))).....................(((..........)))..))))...))).)))))))..)))))..........((((((((((((..((((((((((..((....)).)).))))).))).)))..))))..))))))))))))...))))....)))))))))..

Structure

agagu      u   auagccucuuuguaugggcuucc    uaa       -----------------------------------------------------------ucucuaacaucgagu     au aa      a   -uc    cacagauaugagaucugaacauuauuauuauuaagucc   ucau 
     gguccu gaa                       ugcu   uucuucc                                                                          guaaa  g  uggaag uca   aagc                                      ugg    g
     |||||| |||                       ||||   |||||||                                                                          |||||  |  |||||| |||   ||||                                      |||     
     uuagga cuu                       acgg   aagaggg                                                                          cguuu  c  accUUC AGU   UUCG                                      ACC    c
---gu      -   -------------------ccac    uac       ugucgaaagaacucgaggguaccgcgcgccacagauguaugccgcggaucgaucguucucggcacauaauuagu     gu --      A   UCU    ------------------------------------AC   UUuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ccl-miR396

• Accession: MIMAT0014078
• Description: Citrus clementina ccl-miR396 mature miRNA
• Sequence: 143 - UUCCACAGCUUUCUUGAACUU - 163
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685