miRBase entry: crt-MIR166a

Stem-loop crt-MIR166a


Accession
MI0013310
Description
Citrus reticulata crt-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention crt-MIR166a
(7 sentences)

Sequence

uucccuucagaaucaaauucauuguuugauuuuuuuugagagguuaugguugaugggaauguuguuuggcucgagggucaucuagguuuucaaaauuuucucggacuuucuuucuugcuuuuauuuuuccaggaaaauuauguuauuugccuaugugaucUCGGACCAGGCUUCAUUCCCGUcaaccgacgguuucucucuu
........((((((((((.....))))))))))....((((((...(((((((((((((((..((((((.((((((.((((.(((((...((.((((((((.(((......................))).)))))))).))......))))).)))))))))).))))))..)))))))))))))))......))))))..

Structure
uucccuucagaaucaaauucauuguuugauuuuuuuu      ---uua               uu      c      g    c     ---uuu  a        c   cuuucuuucu 
                                     gagagg      ugguugaugggaaug  guuugg ucgagg ucau uaggu      ca aauuuucu gga          u
                                     ||||||      |||||||||||||||  |||||| |||||| |||| |||||      || |||||||| |||           
                                     cucucu      gccaacUGCCCUUAC  CGGACC GGCUcu agug auccg      gu uuaaaagg ccu          g
-----------------------------------uu      uuggca               UU      A      -    u     uuuauu  a        a   uuuuauuuuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature crt-miR166a

Accession MIMAT0014084
Description Citrus reticulata crt-miR166a mature miRNA
Sequence 161 - UCGGACCAGGCUUCAUUCCCGU - 182
Evidence not_experimental

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685