miRBase entry: crt-MIR166b

Stem-loop crt-MIR166b


Accession
MI0013311
Description
Citrus reticulata crt-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention crt-MIR166b
(5 sentences)

Sequence

uauauguucucaucuggguuagcuuaggguuuugagagcaggaagccaugaaagucgauggaugggagaaaaaugauuguuucugaggggacuguugucuggcucgaugcauuaauaauaauuauaauuauauaauuauaauuaucaugaaaaaaggguaUCGGACCAGGCUUCAUUCCCUUcagaaucaaauucauuguuu
......(((((((((..(((.((((..((((((........))))))....)))).))))))))))))...((((((((.(((((((((((.((..((((((.(((((((....((.((((((((((((....)))))))))))).)).........))))))).))))))..)).))))))))))).)))..)))))....

Structure
uauauguucucaucuggguuagcuuaggguuuugagagcaggaagccaugaaagucgauggaugggagaaa     --   u           c  uu      c       -----auua  a            a 
                                                                       aauga  uug uucugagggga ug  gucugg ucgaugc         au auaauuauaauu u
                                                                       |||||  ||| ||||||||||| ||  |||||| |||||||         || ||||||||||||  
                                                                       uuacu  aac aagacUUCCCU AC  CGGACC GGCUaug         ua uauuaauauuaa a
-------------------------------------------------------------------uuug     ua   u           U  UU      A       ggaaaaaag  c            u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature crt-miR166b

Accession MIMAT0014085
Description Citrus reticulata crt-miR166b mature miRNA
Sequence 161 - UCGGACCAGGCUUCAUUCCCUU - 182
Evidence not_experimental

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685