Stem-loop crt-MIR171

Accession

MI0013313

Description

Citrus reticulata crt-MIR171 precursor miRNA

Literature search

2 open access papers mention crt-MIR171
(12 sentences)

Sequence

aauaugacaggaauaugcaggaugcuggaaucuuguuuccuaucuuuuggggguuaaaaugaagauuguggugaccauuuuggaggauggauggguacaacgggauauuggugcgguucaauaagaaaacggugcucaauacuuuuugagcuccgcuuuuUGAUUGAGCCGUGCCAAUAUCacgugccacucgcucucuaa
.....((.(((((...(((((((......)))))))))))).))....((((((.............(((((..((((((........)))))).....(((.(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).))))))))))))))))))).))))))))..))))))...

Structure

aauaugacaggaauaugcaggaugcuggaaucuuguuuccuaucuuuu      uaaaaugaagauu     gaccauuuuggaggauggauggguaca   g                   a     a   u      ua 
                                                gggggu             guggu                           acg gauauuggugcgguucaau agaaa cgg gcucaa  c
                                                ||||||             |||||                           ||| ||||||||||||||||||| ||||| ||| ||||||   
                                                cucucg             caccg                           ugc CUAUAACCGUGCCGAGUUA Uuuuu gcc cgaguu  u
---------------------------------------------aau      -----------cu     ---------------------------   a                   G     c   u      uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature crt-miR171

• Accession: MIMAT0014087
• Description: Citrus reticulata crt-miR171 mature miRNA
• Sequence: 161 - UGAUUGAGCCGUGCCAAUAUC - 181
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685