Stem-loop bma-mir-81

Accession

MI0013318

Description

Brugia malayi bma-mir-81 precursor miRNA

Literature search

2 open access papers mention bma-mir-81
(2 sentences)

Sequence

1697586 reads, 48790.0 reads per million, 26 experiments

ggugggggcaguAGGCCUUCACCAUGAUCUACAGAaugcuaucauuuugagucUGAGAUCAUUGUGAAAGCUAUuugccuucuaccgucuc
(((((((((((..(((.(((((.(((((((.((((................))))))))))).))))).)))..))))).)))))).....

Structure

-----      -     uA   C     C       A    augcuau 
     gguggg ggcag  GGC UUCAC AUGAUCU CAGA       c
     |||||| |||||  ||| ||||| ||||||| ||||        
     ccaucu ccguu  UCG AAGUG UACUAGA GUcu       a
cucug      u     UA   A     U       -    gaguuuu 

Annotation confidence High

Genome context

Bmal_v3_scaffold36: 282673-282763 [-]

Mature bma-miR-81-5p

• Accession: MIMAT0057198
• Description: Brugia malayi bma-miR-81-5p mature miRNA
• Sequence: 13 - AGGCCUUCACCAUGAUCUACAGA - 35
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-81-3p

• Accession: MIMAT0014093
• Description: Brugia malayi bma-miR-81-3p mature miRNA
• Sequence: 54 - UGAGAUCAUUGUGAAAGCUAU - 74
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498