Stem-loop bma-lin-4

Accession

MI0013320

Description

Brugia malayi bma-lin-4 precursor miRNA

Literature search

15 open access papers mention bma-lin-4
(45 sentences)

Sequence

308204 reads, 35622.0 reads per million, 26 experiments

aaagaaagcuugcgaccuucUCCCUGAGACCUCUGCUGCGAcaguacguggcgucACAGCAAGAGUACCUCAGGGUCCagguccuuucga
...(((((.....(((((...(((((((..((((((((.(((.((.....))))).)))).))))...)))))))...))))))))))..

Structure

aaa     cuugc     ucU       -AC    -    C   a  a 
   gaaag     gaccu   CCCUGAG   CUCU GCUG GAc gu c
   |||||     |||||   |||||||   |||| |||| ||| || g
   cuuuc     cugga   GGGACUC   GAGA CGAC cug cg u
-ag     -----     CCU       CAU    A    A   -  g 

Annotation confidence High

Genome context

Bmal_v3_scaffold17: 230335-230424 [-]

Mature bma-lin-4-5p

• Accession: MIMAT0014095
• Description: Brugia malayi bma-lin-4-5p mature miRNA
• Sequence: 21 - UCCCUGAGACCUCUGCUGCGA - 41
• Evidence: experimental ; Illumina [2]

Mature bma-lin-4-3p

• Accession: MIMAT0057200
• Description: Brugia malayi bma-lin-4-3p mature miRNA
• Sequence: 56 - ACAGCAAGAGUACCUCAGGGUCC - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498