Stem-loop bma-mir-2a

Accession

MI0013321

Description

Brugia malayi bma-mir-2a precursor miRNA

Literature search

5 open access papers mention bma-mir-2a
(40 sentences)

Sequence

333536 reads, 3710.0 reads per million, 26 experiments

uucuccgacaCGUCAAAGUGGUCAGUGAUGUGucgcaaaaugaaauucaUAUCACAGCCAGCUUUGAUGUguugugcgcuugucgacccau
.....(((((((((((((((((..((((((((...............)))))))).)))).))))))))))))).................

Structure

------------uucuc             -    CA        ucgcaa 
                 cgacaCGUCAAAG UGGU  GUGAUGUG      a
                 ||||||||||||| ||||  ||||||||      a
                 guugUGUAGUUUC ACCG  CACUAUac      u
uacccagcuguucgcgu             G    -A        uuaaag 

Annotation confidence High

Genome context

Bmal_v3_scaffold75: 41811-41901 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-2a

Mature bma-miR-2a-5p

• Accession: MIMAT0057201
• Description: Brugia malayi bma-miR-2a-5p mature miRNA
• Sequence: 11 - CGUCAAAGUGGUCAGUGAUGUG - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-2a-3p

• Accession: MIMAT0014096
• Description: Brugia malayi bma-miR-2a-3p mature miRNA
• Sequence: 50 - UAUCACAGCCAGCUUUGAUGU - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498