Stem-loop bma-mir-2c

Accession

MI0013324

Description

Brugia malayi bma-mir-2c precursor miRNA

Literature search

5 open access papers mention bma-mir-2c
(37 sentences)

Sequence

146483 reads, 17245.0 reads per million, 26 experiments

caaaucucgugAGCCGUAUCGGCUUUGUGGUACAuuguaauucgguuaugCAUCACAGCACGAUUCGGCUCgcgaaguguuaauuuuucau
......((((((((((.(((((((..(((((.(((............))).)))))))).)))).))))))))))................

Structure

----------caaauc          U    -   UU     A   uguaa 
                ucgugAGCCG AUCG GCU  GUGGU CAu     u
                |||||||||| |||| |||  ||||| |||      
                agcgCUCGGC UAGC CGA  CACUA gua     u
uacuuuuuaauuguga          U    A   --     C   uuggc 

Annotation confidence High

Genome context

Bmal_v3_scaffold435: 2942-3032 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from bma-mir-2c

Mature bma-miR-2c-5p

• Accession: MIMAT0057203
• Description: Brugia malayi bma-miR-2c-5p mature miRNA
• Sequence: 12 - AGCCGUAUCGGCUUUGUGGUACA - 34
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

Mature bma-miR-2c-3p

• Accession: MIMAT0014098
• Description: Brugia malayi bma-miR-2c-3p mature miRNA
• Sequence: 51 - CAUCACAGCACGAUUCGGCUC - 71
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498