Stem-loop bma-mir-7

Accession

MI0013325

Description

Brugia malayi bma-mir-7 precursor miRNA

Literature search

4 open access papers mention bma-mir-7
(10 sentences)

Sequence

140732 reads, 1437.0 reads per million, 25 experiments

aaaaguuaaagcugaccaggUGGAAGACUUGUGAUUUUGUUGUuuauacauuuucagcaaCAGCAAAUCCGAGCUCUCCACCcggaggcau
..........(((..((.((((((.((((((.((((((((((((...........)))))))..))))))))).)))))))).)).)))..

Structure

aaaaguuaaa   ga  a      A  -    U     --       uaua 
          gcu  cc ggUGGA GA CUUG GAUUU  UGUUGUu    c
          |||  || |||||| || |||| |||||  |||||||    a
          cgg  gg CCACCU CU GAGC CUAAA  ACaacga    u
--------ua   -a  c      -  C    -     CG       cuuu 

Annotation confidence High

Genome context

Bmal_v3_scaffold1: 2387985-2388075 [-]

Mature bma-miR-7-5p

• Accession: MIMAT0014099
• Description: Brugia malayi bma-miR-7-5p mature miRNA
• Sequence: 21 - UGGAAGACUUGUGAUUUUGUUGU - 43
• Evidence: experimental ; Illumina [2]

Mature bma-miR-7-3p

• Accession: MIMAT0057204
• Description: Brugia malayi bma-miR-7-3p mature miRNA
• Sequence: 61 - CAGCAAAUCCGAGCUCUCCACC - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498