Stem-loop bma-mir-57

Accession

MI0013331

Description

Brugia malayi bma-mir-57 precursor miRNA

Literature search

3 open access papers mention bma-mir-57
(7 sentences)

Sequence

176217 reads, 2574.0 reads per million, 24 experiments

cuuuuugagcuuguucgucUACCCUGUGGUACCGAGCUGUGUCUgagugauaagcaaACACGAUCGGUCACUGGGUAAAggaccuugcucu
......((((..(.((.(.(((((.(((..(((((..(((((.((.........)).))))).)))))))).))))).).)).)..)))).

Structure

cuuuuu    uu u  g c     U   GU     GC     C  agu 
      gagc  g uc u UACCC GUG  ACCGA  UGUGU Ug   g
      ||||  | || | ||||| |||  |||||  ||||| ||   a
      cucg  c ag A AUGGG CAC  UGGCU  GCACA ac   u
-----u    uu c  g A     U   --     -A     a  gaa 

Annotation confidence High

Genome context

Bmal_v3_scaffold28: 44889-44979 [+]

Mature bma-miR-57-5p

• Accession: MIMAT0014105
• Description: Brugia malayi bma-miR-57-5p mature miRNA
• Sequence: 20 - UACCCUGUGGUACCGAGCUGUGUCU - 44
• Evidence: experimental ; Illumina [2]

Mature bma-miR-57-3p

• Accession: MIMAT0057207
• Description: Brugia malayi bma-miR-57-3p mature miRNA
• Sequence: 58 - ACACGAUCGGUCACUGGGUAAA - 79
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498