Stem-loop bma-mir-100b

Accession

MI0013339

Description

Brugia malayi bma-mir-100b precursor miRNA

Literature search

5 open access papers mention bma-mir-100b
(27 sentences)

Sequence

143644 reads, 5313.0 reads per million, 26 experiments

gugugagguagcacacggucAACCCGUAGAUCCGAACUUGUGuugagauuuucuuccgaaCAUGAGGUCGGCAUUCGGGUAGAcugcgugu
..........((((.(((((.(((((..(((((((.((((((((..((......))..)))))))).)))).)))))))).))))).))))

Structure

gugugaggua    a     A     UA   -    A        ga  uu 
          gcac cgguc ACCCG  GAU CCGA CUUGUGuu  ga  u
          |||| ||||| |||||  ||| |||| ||||||||  ||   
          ugug gucAG UGGGC  UUA GGCU GAGUACaa  cu  u
----------    c     A     --   C    G        gc  uc 

Annotation confidence High

Genome context

Bmal_v3_scaffold247: 48104-48194 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-100b

Mature bma-miR-100b-5p

• Accession: MIMAT0014113
• Description: Brugia malayi bma-miR-100b-5p mature miRNA
• Sequence: 21 - AACCCGUAGAUCCGAACUUGUG - 42
• Evidence: experimental ; Illumina [2]

Mature bma-miR-100b-3p

• Accession: MIMAT0057212
• Description: Brugia malayi bma-miR-100b-3p mature miRNA
• Sequence: 61 - CAUGAGGUCGGCAUUCGGGUAGA - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498