Stem-loop bma-mir-100c

Accession

MI0013340

Description

Brugia malayi bma-mir-100c precursor miRNA

Literature search

5 open access papers mention bma-mir-100c
(20 sentences)

Sequence

454814 reads, 40374.0 reads per million, 26 experiments

guuuucgaucAACCCGUAGAACUGAAAUCGUGuuugauuuuugcaacACGAUUCUGUUCUCGGGUCGauugcuugc
.....(((((.(((((.(((((.(((.(((((((..(....)..)))))))))).)))))))))).))))).....

Structure

guuuu     A     U     U   A       ug u 
     cgauc ACCCG AGAAC GAA UCGUGuu  a u
     ||||| ||||| ||||| ||| |||||||  |  
     guuaG UGGGC UCUUG CUU AGCAcaa  u u
cguuc     C     -     U   -       cg u 

Annotation confidence High

Genome context

Bmal_v3_scaffold1: 4628686-4628761 [-]

Mature bma-miR-100c-5p

• Accession: MIMAT0014114
• Description: Brugia malayi bma-miR-100c-5p mature miRNA
• Sequence: 11 - AACCCGUAGAACUGAAAUCGUG - 32
• Evidence: experimental ; Illumina [2]

Mature bma-miR-100c-3p

• Accession: MIMAT0057213
• Description: Brugia malayi bma-miR-100c-3p mature miRNA
• Sequence: 48 - ACGAUUCUGUUCUCGGGUCG - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498