Stem-loop bma-mir-124

Accession

MI0013342

Description

Brugia malayi bma-mir-124 precursor miRNA

Literature search

7 open access papers mention bma-mir-124
(16 sentences)

Sequence

43139 reads, 249.0 reads per million, 20 experiments

caaaggacgucuCGCUUUCACCGGUGACCUUGGUuuguuauguuuaguacUAAGGCACGCGGUGAAUGCCAAacguucucuugcuauaccu
((((((((((...((.((((((((((.((((((((((.......))).)))))))))).))))))).))...))))))).)))........

Structure

--------   -       cuC  U       -   A       -   uu 
        caa aggacgu   GC UUCACCG GUG CCUUGGU uug  a
        ||| |||||||   || ||||||| ||| ||||||| |||  u
        guu ucuugca   CG AAGUGGC CAC GGAAUca gau  g
uccauauc   c       AAC  U       G   -       u   uu 

Annotation confidence High

Genome context

Bmal_v3_scaffold117: 41310-41400 [-]

Mature bma-miR-124-5p

• Accession: MIMAT0057215
• Description: Brugia malayi bma-miR-124-5p mature miRNA
• Sequence: 13 - CGCUUUCACCGGUGACCUUGGU - 34
• Evidence: experimental ; Northern [1], Illumina [2]

Mature bma-miR-124-3p

• Accession: MIMAT0014116
• Description: Brugia malayi bma-miR-124-3p mature miRNA
• Sequence: 51 - UAAGGCACGCGGUGAAUGCCAA - 72
• Evidence: experimental ; Northern [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498