Stem-loop bma-mir-133

Accession

MI0013343

Description

Brugia malayi bma-mir-133 precursor miRNA

Sequence

1235 reads, 817.0 reads per million, 24 experiments

uugauuggacaagguaugcuaugacggacauuuacauaCCUGGUUGUAGUCGAACCAAAUUGuuauauuuuuaaaaucaaUUGGUCCCCUUCAACCAGCUAuguuucuccuccuguaaacaucuaguuaa
.((((((((....((.(((...((.(((.....(((((.(((((((.((..((.((((.(((...............)))))))))..)).))))))).)))))...)))))..))).)).)))))))).

Structure

u        caag  a   uau  c   cauuu     C       U  UC  A    A   uuauau 
 ugauugga    gu ugc   ga gga     acaua CUGGUUG AG  GA CCAA UUG      u
 ||||||||    || |||   || |||     ||||| ||||||| ||  || |||| |||      u
 auugaucu    ca aug   cu ccu     uguAU GACCAAC UC  CU GGUU aac      u
a        ---a  a   -uc  -   --cuu     C       U  CC  -    -   uaaaau 

Annotation confidence High

Genome context

Bmal_v3_scaffold1: 3609224-3609353 [+]

Mature bma-miR-133-5p

• Accession: MIMAT0057216
• Description: Brugia malayi bma-miR-133-5p mature miRNA
• Sequence: 39 - CCUGGUUGUAGUCGAACCAAAUUG - 62
• Evidence: experimental ; Illumina [2]

Mature bma-miR-133-3p

• Accession: MIMAT0014117
• Description: Brugia malayi bma-miR-133-3p mature miRNA
• Sequence: 81 - UUGGUCCCCUUCAACCAGCUA - 101
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498