Stem-loop bma-mir-279

Accession

MI0013348

Description

Brugia malayi bma-mir-279 precursor miRNA

Literature search

4 open access papers mention bma-mir-279
(12 sentences)

Sequence

255495 reads, 30036.0 reads per million, 26 experiments

ucauucguagCUGAGCAUGGUUCUUAGUCAUGuggcauguaagagauucaUGACUAGAACCAUACUCAGCuaugugacccggcauucuuaa
(((..((((((((((.((((((((.(((((((...(........)...))))))))))))))).)))))))))))))..............

Structure

--------------   uu          C        U       ugg aug 
              uca  cguagCUGAG AUGGUUCU AGUCAUG   c   u
              |||  |||||||||| |||||||| |||||||   |    
              agu  guauCGACUC UACCAAGA UCAGUac   g   a
aauucuuacggccc   --          A        -       uua aga 

Annotation confidence High

Genome context

Bmal_v3_scaffold435: 4948-5038 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from bma-mir-279

Mature bma-miR-279-5p

• Accession: MIMAT0057220
• Description: Brugia malayi bma-miR-279-5p mature miRNA
• Sequence: 11 - CUGAGCAUGGUUCUUAGUCAUG - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-279-3p

• Accession: MIMAT0014122
• Description: Brugia malayi bma-miR-279-3p mature miRNA
• Sequence: 51 - UGACUAGAACCAUACUCAGC - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498