miRBase entry: bma-mir-281

Stem-loop bma-mir-281

Accession

MI0013349

Description

Brugia malayi bma-mir-281 precursor miRNA

Sequence

ggugaacgcagacgacaAAGAGAGCCAUCUGUUGACAGUcauauauugcaacUGUCAUGGAAUUGCUCUCUUUAcaugccuguguucuaag
...((((((((.((..(((((((((..(((((.((((((((.....))..)))))))))))...)))))))))...)).))))))))....

Structure

-ggu        a  -ac         -CA     U      --  u 
    gaacgcag cg   aAAGAGAGC   UCUGU GACAGU  ca a
    |||||||| ||   |||||||||   ||||| ||||||  || u
    cuuguguc gu   UUUCUCUCG   AGGUA CUGUca  gu a
gaau        c  acA         UUA     -      ac  u

Annotation confidence Not enough data

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Genome context

Bmal_v3_scaffold18: 454490-454580 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-281

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-281-3p

Accession	MIMAT0014123
Description	Brugia malayi bma-miR-281-3p mature miRNA
Sequence	53 - UGUCAUGGAAUUGCUCUCUUUA - 74
Evidence	experimental Illumina [2]

Mature bma-miR-281-5p

Accession	MIMAT0037378
Description	Brugia malayi bma-miR-281-5p mature miRNA
Sequence	18 - AAGAGAGCCAUCUGUUGACAGU - 39
Evidence	experimental Illumina [2]

References

PubMed ID: 19874857
Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
"Poole CB, Davis PJ, Jin J, McReynolds LA"
"Mol Biochem Parasitol (2010) 169:87-94

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498