Stem-loop api-mir-137

Accession

MI0013352

Description

Acyrthosiphon pisum api-mir-137 precursor miRNA

Literature search

1 open access papers mention api-mir-137
(1 sentences)

Sequence

2853 reads, 106.0 reads per million, 4 experiments

aacuugguuggccCCGCGUAUUCUUGGGACAUAACAcauauuuaagacuguUAUUGCUUGAGAAUACACGUAGuugacaagu
.(((((.(((((..((.(((((((((((..((((((............))))))..))))))))))).))..))))))))))

Structure

a     g     cC  C           AC      cauau 
 acuug uuggc  CG GUAUUCUUGGG  AUAACA     u
 ||||| |||||  || |||||||||||  ||||||      
 ugaac aguuG  GC CAUAAGAGUUC  UAUugu     u
-     -     AU  A           GU      cagaa 

Annotation confidence High

Genome context

GL349951.1: 311432-311513 [+]

Mature api-miR-137-5p

• Accession: MIMAT0057258
• Description: Acyrthosiphon pisum api-miR-137-5p mature miRNA
• Sequence: 14 - CCGCGUAUUCUUGGGACAUAACA - 36
• Evidence: experimental ; Illumina [2]

Mature api-miR-137-3p

• Accession: MIMAT0014126
• Description: Acyrthosiphon pisum api-miR-137-3p mature miRNA
• Sequence: 52 - UAUUGCUUGAGAAUACACGUAG - 73
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281