Stem-loop api-mir-190

Accession

MI0013353

Description

Acyrthosiphon pisum api-mir-190 precursor miRNA

Literature search

1 open access papers mention api-mir-190
(1 sentences)

Sequence

21757 reads, 776.0 reads per million, 4 experiments

uucgugAGAUAUGUUUGAUAUUCUUGGUUGuuauauuugaaaccgACCGAGAAUCGGACAUAUUUUAc
...((((((((((((((((..(((((((((((........)).)))))))))))))))))))))))))

Structure

uuc                AU         -  aua 
   gugAGAUAUGUUUGAU  UCUUGGUUG uu   u
   ||||||||||||||||  ||||||||| ||    
   cAUUUUAUACAGGCUA  AGAGCCAgc aa   u
---                --         c  agu 

Annotation confidence High

Genome context

GL350285.1: 84177-84244 [-]

Mature api-miR-190-5p

• Accession: MIMAT0014127
• Description: Acyrthosiphon pisum api-miR-190-5p mature miRNA
• Sequence: 7 - AGAUAUGUUUGAUAUUCUUGGUUG - 30
• Evidence: experimental ; Illumina [2]

Mature api-miR-190-3p

• Accession: MIMAT0057259
• Description: Acyrthosiphon pisum api-miR-190-3p mature miRNA
• Sequence: 46 - ACCGAGAAUCGGACAUAUUUUA - 67
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281