Stem-loop api-mir-10

Accession

MI0013354

Description

Acyrthosiphon pisum api-mir-10 precursor miRNA

Literature search

8 open access papers mention api-mir-10
(29 sentences)

Sequence

1574278 reads, 94519.0 reads per million, 6 experiments

augcucuacaucuACCCUGUAGAUCCGAAUUUGUuugaaaaacggcgacAAAUUCGGUUCUAGAGAGGUUUguguggugcaua
((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).

Structure

-    u      cu   -  G    U           ugaa 
 augc cuacau  ACC CU UAGA CCGAAUUUGUu    a
 |||| ||||||  ||| || |||| |||||||||||    a
 uacg ggugug  UGG GA AUCU GGCUUAAAcag    a
a    u      UU   A  G    U           cggc 

Annotation confidence High

Genome context

GL350757.1: 17838-17920 [+]

Mature api-miR-10-5p

• Accession: MIMAT0014128
• Description: Acyrthosiphon pisum api-miR-10-5p mature miRNA
• Sequence: 14 - ACCCUGUAGAUCCGAAUUUGU - 34
• Evidence: experimental ; Illumina [2]

Mature api-miR-10-3p

• Accession: MIMAT0057260
• Description: Acyrthosiphon pisum api-miR-10-3p mature miRNA
• Sequence: 50 - AAAUUCGGUUCUAGAGAGGUUU - 71
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281