Stem-loop api-bantam

Accession

MI0013356

Description

Acyrthosiphon pisum api-bantam precursor miRNA

Literature search

4 open access papers mention api-bantam
(15 sentences)

Sequence

887391 reads, 28160.0 reads per million, 6 experiments

cgaagcUGGUUUUCACUUUGAUCUGUCAGAuuuaucauuguucauucUGAGAUCAUUGUGAAAGCUAAUUu
......((((((((((..(((((..(((((...............))))))))))..))))))))))....

Structure

cgaagc          UU     UG     uuuauc 
      UGGUUUUCAC  UGAUC  UCAGA      a
      ||||||||||  |||||  |||||      u
      AUCGAAAGUG  ACUAG  AGUcu      u
--uUUA          UU     --     uacuug 

Annotation confidence High

Genome context

GL349821.1: 48793-48863 [+]

Mature api-bantam-5p

• Accession: MIMAT0057261
• Description: Acyrthosiphon pisum api-bantam-5p mature miRNA
• Sequence: 7 - UGGUUUUCACUUUGAUCUGUCAGA - 30
• Evidence: experimental ; Illumina [2]

Mature api-bantam-3p

• Accession: MIMAT0014130
• Description: Acyrthosiphon pisum api-bantam-3p mature miRNA
• Sequence: 48 - UGAGAUCAUUGUGAAAGCUAAUU - 70
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281