Stem-loop api-mir-184a

Accession

MI0013358

Description

Acyrthosiphon pisum api-mir-184a precursor miRNA

Literature search

1 open access papers mention api-mir-184a
(1 sentences)

Sequence

474402 reads, 120063.0 reads per million, 6 experiments

CCUUAUCAUUCUUCGCCUUGUgugcaauuuaaacaacUGGACGGAGAACUGAUAAGGGCugguau
(((((((((((((((((...(((.........)))...)).))))))).))))))))........

Structure

--------        -       -  UUG   gca 
        CCUUAUCA UUCUUCG CC   Ugu   a
        |||||||| ||||||| ||   |||   u
        GGAAUAGU AAGAGGC GG   aca   u
uaugguCG        C       A  Uca   aau 

Annotation confidence High

Genome context

GL350713.1: 96305-96369 [+]

Mature api-miR-184a-5p

• Accession: MIMAT0057262
• Description: Acyrthosiphon pisum api-miR-184a-5p mature miRNA
• Sequence: 1 - CCUUAUCAUUCUUCGCCUUGU - 21
• Evidence: experimental ; Illumina [2]

Mature api-miR-184a-3p

• Accession: MIMAT0014132
• Description: Acyrthosiphon pisum api-miR-184a-3p mature miRNA
• Sequence: 38 - UGGACGGAGAACUGAUAAGGGC - 59
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281