Stem-loop api-mir-276

Accession

MI0013359

Description

Acyrthosiphon pisum api-mir-276 precursor miRNA

Literature search

7 open access papers mention api-mir-276
(12 sentences)

Sequence

11366304 reads, 552776.0 reads per million, 6 experiments

gaccacuAGCGAGGUAUAGAGUUCCUAcguucaaauuauuaauguuacucgUAGGAACUUCAUACCGUGCUCUugga
..(((..((((.(((((.(((((((((((....................))))))))))).))))).))))..))).

Structure

ga   cu    A     A           uucaaauua 
  cca  AGCG GGUAU GAGUUCCUAcg         u
  |||  |||| ||||| |||||||||||          
  ggu  UCGU CCAUA UUCAAGGAUgc         u
-a   UC    G     C           ucauuguaa 

Annotation confidence High

Genome context

GL350277.1: 351893-351969 [+]

Mature api-miR-276-5p

• Accession: MIMAT0057263
• Description: Acyrthosiphon pisum api-miR-276-5p mature miRNA
• Sequence: 8 - AGCGAGGUAUAGAGUUCCUA - 27
• Evidence: experimental ; Illumina [2]

Mature api-miR-276-3p

• Accession: MIMAT0014133
• Description: Acyrthosiphon pisum api-miR-276-3p mature miRNA
• Sequence: 52 - UAGGAACUUCAUACCGUGCUCU - 73
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281