Stem-loop api-mir-993

Accession

MI0013361

Description

Acyrthosiphon pisum api-mir-993 precursor miRNA

Literature search

1 open access papers mention api-mir-993
(1 sentences)

Sequence

51013 reads, 2020.0 reads per million, 6 experiments

cauccgugauCUACCCUGUAGAUCCGGGCUuuuguagaauaaucgauauguucaGAAGCUCGUCUCUACAGGUAUCUuacggauggaa
(((((((((..((((.((((((..((((((((((....(((.....)))...))))))))))..))))))))))..)))))))))...

Structure

---         uC    C      UC          uaga   a 
   cauccguga  UACC UGUAGA  CGGGCUuuug    aua u
   |||||||||  |||| ||||||  ||||||||||    ||| c
   guaggcauU  AUGG ACAUCU  GCUCGAAGac    uau g
aag         CU    -      CU          -uug   a 

Annotation confidence Medium

Genome context

GL349666.1: 1740245-1740332 [+]

Mature api-miR-993-5p

• Accession: MIMAT0057265
• Description: Acyrthosiphon pisum api-miR-993-5p mature miRNA
• Sequence: 11 - CUACCCUGUAGAUCCGGGCU - 30
• Evidence: experimental ; Illumina [2]

Mature api-miR-993-3p

• Accession: MIMAT0014135
• Description: Acyrthosiphon pisum api-miR-993-3p mature miRNA
• Sequence: 55 - GAAGCUCGUCUCUACAGGUAUCU - 77
• Evidence: experimental ; Illumina [2]

References

1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
   "Sathyamurthy G, Swamy NR"
   J Comp Intell Bioinf (2009) 2:109-119


2. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281