Stem-loop ath-MIR2933a

Accession

MI0013362

Description

Arabidopsis thaliana ath-MIR2933a precursor miRNA MIR2933

Gene
family

RF03984; MIR2933

Literature search

1 open access papers mention ath-MIR2933a
(1 sentences)

Sequence

49581 reads, 352.0 reads per million, 183 experiments

gaaauucguuggcgauuuugagugaaaucggagagggAAUUCGUCGGCGAUUUUGaguGAAAUCGGAGAGGAAAUUCGCCggcgauuuugagugaaaucggagaggaaaauc
....(((.((..((((((((...(((((((..(.(.((((((.((..(((((((....)))))))..)).).))))).))..)))))))...))))))))..)).)))....

Structure

gaaa   g  gg        agu       ga a g     - G  GG       G 
    uuc uu  cgauuuug   gaaaucg  g g gAAUU C UC  CGAUUUU a
    ||| ||  ||||||||   |||||||  | | ||||| | ||  |||||||  
    aag ag  gcuaaagu   uuuuagc  C C CUUAA G AG  GCUAAAG g
cuaa   g  ag        gag       gg - G     A G  AG       u 

Annotation confidence Low

Genome context

chr1: 11901409-11901520 [+]

Mature ath-miR2933a-5p

• Accession: MIMAT0053891
• Description: Arabidopsis thaliana ath-miR2933a-5p mature miRNA
• Sequence: 38 - AAUUCGUCGGCGAUUUUG - 55
• Evidence: experimental ; unknown

Mature ath-miR2933a-3p

• Accession: MIMAT0014136
• Description: Arabidopsis thaliana ath-miR2933a-3p mature miRNA
• Sequence: 59 - GAAAUCGGAGAGGAAAUUCGCC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20042113
   MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
   Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
   BMC Genomics (2009) 10:643